Design of a multi-epitope-based vaccine consisted of immunodominant epitopes of structural proteins of SARS-CoV-2 using immunoinformatics approach.

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has shown rapid global spread and has resulted in a significant death toll worldwide. In this study, we aimed to design a multi-epitope vaccine against SARS-CoV-2 based on structural proteins S, M, N, and E. We identified B- and T-cell epitopes and then the antigenicity, toxicity, allergenicity, and similarity of predicted epitopes were analyzed. T-cell epitopes were docked with corresponding HLA alleles. Consequently, the selected T- and B-cell epitopes were included in the final construct. All selected epitopes were connected with different linkers and flagellin and pan-HLA DR binding epitopes (PADRE) as an adjuvant were used in the vaccine construct. Furthermore, molecular docking was used to evaluate the complex between the final vaccine construct and two alleles, HLA-A*02:01 and HLA-DRB1*01:01. Finally, codons were optimized for in silico cloning into pET28a(+) vector using SnapGene. The final vaccine construct comprised 11 CTL, HTL, and B-cell epitopes corresponding to 394 amino acid residues. In silico evaluation showed that the designed vaccine might potentially promote an immune response. Further in vivo preclinical and clinical testing is required to determine the safety and efficacy of the designed vaccine.

Coinfection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza virus during the COVID-19 pandemic.

The prevalence of coinfection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and influenza virus among referred patients in Hamadan province, Iran, from November 2, 2021, to January 30, 2022, was evaluated. Samples were obtained from 14,116 individuals with COVID-19 symptoms and screened for SARS-CoV-2 and influenza viruses using a multiplex real-time PCR panel assay. Of these patients, 14.19%, 17.11%, and 1.35% were infected with influenza virus, SARS-CoV-2, and both viruses, respectively. The majority of the coinfected patients were female outpatients aged 19-60 years.

An Overview of Antiviral Properties of Bacteriophages with Emphasis on the Treatment of COVID-19 Infection.

Bacteriophages or phages are the most abundant organisms in the biosphere. Scientists considered phages an appropriate tool for understanding molecular biology, horizontal gene transfer vectors, stimulants of bacterial evolution, a source of diagnostic and genetic tools, and new therapeutic agents. Therefore, studying the biology of phages and their interactions with their hosts is crucial to gaining a deeper knowledge of biological systems. Numerous studies confirmed that bacteriophages are a genetic tool with high potential for treating infectious diseases, including bacterial, fungal, and viral infections. Therefore, phages may be used as an appropriate therapeutic target against some viruses, such as COVID-19 infection. In this study, we describe the role of phages in modulating the host immune system, the production of specific antibodies against the COVID-19 virus by the host immune system, and the minimization of damage caused by the COVID-19 virus to the host. Also, the present study expresses our understanding of the prospect of phage therapy as an adjunctive therapy.

Prevalence and Seasonal Frequency of acute viral gastroenteritis in children less than 5 years in Ilam, Iran

Background: Acute viral gastroenteritis is a major source of morbidity and mortality in young children. The purpose of the study was to investigate the frequency and cause of acute gastroenteritis in children admitted to the Ilam hospital in Iran. Materials and Methods: 103 children suffering from acute diarrhea suspected of viral infections were included. Stool samples were collected and the prevalence rate of common viruses such as Rotavirus, Norovirus G1/G11, Astrovirus, Sapovirus, Adenovirus (multiplex) Picornavirus, Picobirnavirus, Torovirus, Bocavirus, and Coronavirus was determined by multiplex PCR- based, and Monoplex assay. Results: The viruses that cause the symptoms, were detected in 37 out of the 103 cases, that 2 cases were found to be co-infection. Rotavirus was detected in 17/103 Norovirus, in 13/103, Astrovirus, in 4/103, and Adenovirus, in 3/103. The percentage of Norovirus genogroups 1 and 11 were 15.4% and 84.6%, respectively. We could not detect any virus in winter. Conclusions: The viral etiology was confirmed in about one-third of the subjects. Rotavirus was the most frequently detected virus.